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Beginning Perl for Bioinformatics

Beginning Perl for Bioinformatics
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E
E (expect) value of matches, BLAST program

EcoRI restriction enzyme

elements, array
accessing with subscripts

adding, using push and shift functions

randomly selecting

specifying individual

else statements

elsif statements

empty string

end-of-record separator (//) , 2nd

Ensembl web site, use of Bioperl modules

Entrez (public database server)

enzymes

See : =, under Symbols equal (=) sign

error messages
directing to STDERR , 2nd

warnings (-w) flag

EST (expressed sequence tag division), GenBank libraries

European Bioinformatics Institute (EBI) web site

European Molecular Biology Laboratory (EMBL)
web site

examples from this book
protein sequence file, downloading

examples from this book
web site for downloads

exec function

exists (-e) file test

exists function

exit function , 2nd

expect (E) value of BLAST matches

experimental studies, in silico

exploding strings into arrays

exponential notation

expression, genes

expressions, nested
order of evaluation

extract_HSP_information subroutine

extract_sequence_from_fasta_data subroutine

extractSEQRES subroutine