Beginning Perl for Bioinformatics

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G

    See : guanine G

 gcc compiler

 GD and Tk modules for graphics

 GenBank (Genetic Sequence Data Bank) , 2nd

annotations

 problems with

 desktop workstations, setting up

files

 records

 indexing with DBM

 libraries

 library subroutines, testing

separating annotations from sequences

 using scalars

gene expression data

 database for

 gene names, data structures for manipulating

 hashes, using

 microarrays, studying with

 sorted arrays and binary search, using

 unsorted arrays, using for

 gene features key

 generate random DNA program (example)

genes

 coding DNA

 computer simulation, studying with

 cutting DNA to insert

 genetic code

 hashes, using for

 reading DNA from FASTA format files

reading frames

 translating

 redundancy in

 translating codons to amino acids

 translating DNA into proteins

 genetic information data banks

 Genetics Computer Group (GCG) DNA file format

 genomes, large-scale studies of

 get_file_data subroutine

 reading in PDB file

 get_next_record function

 global matching (/g) , 2nd

 global searches in loops

 global substitution

 global variables , 2nd

 governmental organizations, bioinformatics (web sites)

 graph algorithms, modelling biological networks with

 graphical user interfaces (GUIs) , 2nd

 displays for programs

 greater than (>)

 greedy matching

 grep function

 grouping in regular expressions

 guanine (G) , 2nd

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